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A new Filtering Algorithm for Medical Magnetic Resonance and Computer Tomography Images

Inner views of tubular structures based on Computer Tomography (CT) and Magnetic Resonance (MR) data sets may be created by virtual endoscopy. After a preliminary segmentation procedure for selecting the organ to be represented, virtual endoscopy is a new post processing technique using surface or volume rendering. In case of surface rendering, the segmentation is based on a grey level thresholding technique. To avoid artifacts due to the noise created in the imaging process, and to restore spurious resolution degradations, a robust Wiener filter was applied. This filter working in Fourier space approximates the noise spectrum by a simple function that is proportional to the square root of the signal amplitude. Thus, only points with tiny amplitudes consisting mostly of noise are suppressed. Further artifacts are avoided by the correct selection of the threshold range.


The segmentation process is demonstrated on a MR-colonography slice in coronal plane (left hand side figure) before and (right hand side figure) after the application of the new filtering algorithm. Green picture segments have intensity values larger than the chosen threshold and white picture segments are the reminder points due to noise and background intensities created by other organs.
After the filtering and thresholding process, the lumen and the inner walls of the tubular structures are well represented and allow one to distinguish between harmless fluctuations and medically significant structures.


For more information see:

A new filtering algorithm for medical magnetic resonance and computer tomography images
Erich Stoll, Christian Stern, Peter Stucki, and Simon Wildermuth
Journal of Digital Imaging, 12, #1, 23 (1999).

A recent study in New England Journal of Medicine, 349, 2191-2200 (2003), Computed Tomographic Virtual Colonoscopy to Screen for Colorectal Neoplasia in Asymptomatic Adults, of Perry J. Pickhardt et al has shown that virtual endoscopy is more reliable for early recognition of colon cancers than usual optical endoscopy.